{
  "slug": "dp_007-q01-claude",
  "dp": "dp_007",
  "files": 200,
  "qid": "q01",
  "family": "single_hop",
  "prompt": "What is the lab protocol ID for general maintenance of human induced pluripotent stem cells in the Reed Lab?",
  "gold": "RL-P-002",
  "agent": "claude",
  "fs": {
    "agent": "claude",
    "success": true,
    "steps": 9,
    "inputTokens": 271509,
    "outputTokens": 358,
    "totalTokens": 271867,
    "cost": 4.0995,
    "durationMs": 30287,
    "answer": "Found it. The protocol is `RL-P-002`, titled \"General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)\" (file: `agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md`).\n\n**Lab protocol ID: RL-P-002**",
    "judgeReason": "covers all asked facts",
    "toolCalls": 6,
    "trajectory": [
      {
        "step": 1,
        "inputTokens": 27986,
        "outputTokens": 8,
        "text": "",
        "toolCalls": []
      },
      {
        "step": 2,
        "inputTokens": 27986,
        "outputTokens": 8,
        "text": "",
        "toolCalls": [
          {
            "name": "Bash",
            "input": "{\"command\": \"ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/\", \"description\": \"List agent_memory directory\"}",
            "outputPreview": "communications\ncoursework_biology\nlab\nlectures\nmeetings",
            "outputChars": 55
          }
        ]
      },
      {
        "step": 3,
        "inputTokens": 28229,
        "outputTokens": 66,
        "text": "",
        "toolCalls": [
          {
            "name": "Bash",
            "input": "{\"command\": \"ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/\", \"description\": \"List lab directory\"}",
            "outputPreview": "meetings\nnotebook\noperations\nprotocols",
            "outputChars": 38
          }
        ]
      },
      {
        "step": 4,
        "inputTokens": 28507,
        "outputTokens": 72,
        "text": "",
        "toolCalls": [
          {
            "name": "Bash",
            "input": "{\"command\": \"ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/protocols/\", \"description\": \"List protocols directory\"}",
            "outputPreview": "RL-P-002_general_cell_culture_v4.md\nRL-P-007_hiPSC_neuronal_diff_v3.2.md\nRL-P-011_confocal_microscopy_LSM880.md",
            "outputChars": 111
          }
        ]
      },
      {
        "step": 5,
        "inputTokens": 28743,
        "outputTokens": 52,
        "text": "",
        "toolCalls": [
          {
            "name": "Grep",
            "input": "{\"pattern\": \"induced pluripotent|hiPSC|iPSC|maintenance\", \"path\": \"/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/protocols/\", \"output_mode\": \"files_with_matches\"}",
            "outputPreview": "Found 3 files\nagent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md\nagent_memory/lab/protocols/RL-P-007_hiPSC_neuronal_diff_v3.2.md\nagent_memory/lab/protocols/RL-P-011_confocal_microscopy_LSM880.md",
            "outputChars": 206
          }
        ]
      },
      {
        "step": 6,
        "inputTokens": 29071,
        "outputTokens": 55,
        "text": "",
        "toolCalls": [
          {
            "name": "Grep",
            "input": "{\"pattern\": \"maintenance|hiPSC\", \"path\": \"/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/\", \"output_mode\": \"content\", \"-n\": true, \"head_limit\": 40}",
            "outputPreview": "agent_memory/communications/f171_query_re_Gruber_2018.md:339:Regarding your current challenge with definitive endoderm induction variability, this is a common hurdle in directed differentiation protocols. While our 2018 paper focused primarily on pluripotency maintenance and initial differentiation cues, the downstream steps towards definitive endoderm often require careful optimization.\nagent_mem\u2026",
            "outputChars": 9689
          }
        ]
      },
      {
        "step": 7,
        "inputTokens": 32519,
        "outputTokens": 44,
        "text": "",
        "toolCalls": []
      },
      {
        "step": 8,
        "inputTokens": 32519,
        "outputTokens": 44,
        "text": "",
        "toolCalls": [
          {
            "name": "Grep",
            "input": "{\"pattern\": \"hiPSC|induced pluripotent|maintenance\", \"path\": \"/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/\", \"output_mode\": \"content\", \"-n\": true, \"head_limit\": 30}",
            "outputPreview": "agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md:1:# Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)\nagent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md:30:    4.  [hiPSC Passaging (Manual Dissociation)](#hipsc-passaging-manual-dissociation)\nagent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md:50:[Omitte\u2026",
            "outputChars": 7175
          }
        ]
      },
      {
        "step": 9,
        "inputTokens": 35949,
        "outputTokens": 9,
        "text": "Found it. The protocol is `RL-P-002`, titled \"General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)\" (file: `agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md`).\n\n**Lab protocol ID: RL-P-002**",
        "toolCalls": []
      }
    ]
  },
  "smfs": {
    "agent": "claude",
    "success": true,
    "steps": 3,
    "inputTokens": 93508,
    "outputTokens": 1,
    "totalTokens": 93509,
    "cost": 1.4027,
    "durationMs": 8585,
    "answer": "The lab protocol ID is **RL-P-002** (Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells, version 4.0, issued 2023-09-01).",
    "judgeReason": "covers all asked facts",
    "toolCalls": 1,
    "trajectory": [
      {
        "step": 1,
        "inputTokens": 29864,
        "outputTokens": 0,
        "text": "",
        "toolCalls": []
      },
      {
        "step": 2,
        "inputTokens": 29864,
        "outputTokens": 0,
        "text": "",
        "toolCalls": [
          {
            "name": "Bash",
            "input": "{\"command\": \"smfs grep \\\"lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab\\\" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/\", \"description\": \"Semantic search for Reed Lab iPSC maintenance protocol\"}",
            "outputPreview": "# supermemory semantic search \u2014 10 results for \"lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab\"\n# searches by meaning across files in this container. usage:\n#   grep \"natural language query\"          search all files\n#   grep \"query\" path/to/dir/              search within directory\n# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from\u2026",
            "outputChars": 8364
          }
        ]
      },
      {
        "step": 3,
        "inputTokens": 33780,
        "outputTokens": 1,
        "text": "The lab protocol ID is **RL-P-002** (Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells, version 4.0, issued 2023-09-01).",
        "toolCalls": []
      }
    ]
  }
}