{ "slug": "dp_007-q04-claude", "dp": "dp_007", "files": 200, "qid": "q04", "family": "multi_hop", "prompt": "What is the cell line Lena used for her first formal differentiation attempt (per lab notebook LH-EXP-23-003), and what was the date of that attempt? For context, name also the different cell line she had thawed for general hiPSC maintenance six days earlier (per LH-EXP-23-001).", "gold": "First differentiation attempt: cell line hESC-NS-12 on 2023-09-11 (lab notebook LH-EXP-23-003). The earlier general-maintenance thaw on 2023-09-05 (LH-EXP-23-001) used a different line, R-H-42b.", "agent": "claude", "fs": { "agent": "claude", "success": true, "steps": 8, "inputTokens": 266408, "outputTokens": 301, "totalTokens": 266709, "cost": 4.0187, "durationMs": 23168, "answer": "Per the lab notebooks in `agent_memory/lab/notebook/`:\n\n- **First formal differentiation attempt (LH-EXP-23-003):** cell line **hESC-NS-12** (Passage 32), on **2023-09-11**.\n- **Six days earlier (LH-EXP-23-001):** the line thawed for general hiPSC maintenance was **R-H-42b** (Lot # 789-GHI), on **2023-09-05**.", "judgeReason": "covers all asked facts", "toolCalls": 5, "trajectory": [ { "step": 1, "inputTokens": 28043, "outputTokens": 0, "text": "", "toolCalls": [] }, { "step": 2, "inputTokens": 28043, "outputTokens": 0, "text": "", "toolCalls": [ { "name": "Bash", "input": "{\"command\": \"ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/\", \"description\": \"List agent_memory contents\"}", "outputPreview": "communications\ncoursework_biology\nlab\nlectures\nmeetings", "outputChars": 55 } ] }, { "step": 3, "inputTokens": 28271, "outputTokens": 68, "text": "", "toolCalls": [ { "name": "Bash", "input": "{\"command\": \"ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/\", \"description\": \"List lab folder contents\"}", "outputPreview": "meetings\nnotebook\noperations\nprotocols", "outputChars": 38 } ] }, { "step": 4, "inputTokens": 28551, "outputTokens": 48, "text": "", "toolCalls": [ { "name": "Grep", "input": "{\"pattern\": \"LH-EXP-23-00[13]\", \"path\": \"/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/\", \"output_mode\": \"files_with_matches\"}", "outputPreview": "Found 2 files\nagent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md\nagent_memory/lab/notebook/20230905_LH-EXP-23-001_First-Thaw.md", "outputChars": 153 } ] }, { "step": 5, "inputTokens": 28831, "outputTokens": 59, "text": "", "toolCalls": [ { "name": "Read", "input": "{\"file_path\": \"/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md\"}", "outputPreview": "1\t# Lab Notebook: LH-EXP-23-003 - Neuronal Differentiation - Attempt 1\n2\t\n3\t**Date:** 2023-09-11\n4\t**Author:** Lena Hansen\n5\t**Project:** Core Project - hiPSC Neuronal Differentiation\n6\t**Experiment Series:** experiment_series_lh_23\n7\t\n8\t## Overview\n9\t\n10\tThis marks the beginning of the first formal attempt at inducing neuronal differentiation from the established human induced pluripotent stem ce\u2026", "outputChars": 24278 } ] }, { "step": 6, "inputTokens": 40103, "outputTokens": 42, "text": "", "toolCalls": [ { "name": "Read", "input": "{\"file_path\": \"/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/notebook/20230905_LH-EXP-23-001_First-Thaw.md\", \"limit\": 50}", "outputPreview": "1\t# Lab Notebook Entry: LH-EXP-23-001 - First Thaw\n2\t\n3\t**Date:** 2023-09-05\n4\t**Author:** Lena Hansen\n5\t**Project:** Rotation Project - hiPSC Maintenance and Differentiation\n6\t**Location:** Maple Creek Lab, Cell Culture Suite 2B\n7\t\n8\t## Objective\n9\t\n10\tThis entry details the first successful thaw and plating of human induced pluripotent stem cells (hiPSCs), specifically line R-H-42b. The primary \u2026", "outputChars": 4526 } ] }, { "step": 7, "inputTokens": 42283, "outputTokens": 42, "text": "", "toolCalls": [] }, { "step": 8, "inputTokens": 42283, "outputTokens": 42, "text": "Per the lab notebooks in `agent_memory/lab/notebook/`:\n\n- **First formal differentiation attempt (LH-EXP-23-003):** cell line **hESC-NS-12** (Passage 32), on **2023-09-11**.\n- **Six days earlier (LH-EXP-23-001):** the line thawed for general hiPSC maintenance was **R-H-42b** (Lot # 789-GHI), on **2023-09-05**.", "toolCalls": [] } ] }, "smfs": { "agent": "claude", "success": true, "steps": 6, "inputTokens": 210043, "outputTokens": 160, "totalTokens": 210203, "cost": 3.1626, "durationMs": 16125, "answer": "Found both:\n\n- **LH-EXP-23-003** (first formal differentiation attempt): cell line **hESC-NS-12** (Passage 32), dated **2023-09-11**.\n- **LH-EXP-23-001** (six days earlier, general hiPSC maintenance thaw): cell line **R-H-42b**, dated **2023-09-05**.", "judgeReason": "covers all asked facts", "toolCalls": 3, "trajectory": [ { "step": 1, "inputTokens": 30849, "outputTokens": 8, "text": "", "toolCalls": [] }, { "step": 2, "inputTokens": 30849, "outputTokens": 8, "text": "", "toolCalls": [ { "name": "Bash", "input": "{\"command\": \"smfs grep \\\"LH-EXP-23-003 differentiation cell line\\\" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/\", \"description\": \"Search for LH-EXP-23-003 differentiation entry\"}", "outputPreview": "# supermemory semantic search \u2014 10 results for \"LH-EXP-23-003 differentiation cell line\"\n# searches by meaning across files in this container. usage:\n# grep \"natural language query\" search all files\n# grep \"query\" path/to/dir/ search within directory\n# output: :-: (chunk text is verbatim from the file)\n\n/lab/notebook/20231106_LH-EXP-\u2026", "outputChars": 7638 } ] }, { "step": 3, "inputTokens": 30849, "outputTokens": 8, "text": "", "toolCalls": [ { "name": "Bash", "input": "{\"command\": \"smfs grep \\\"LH-EXP-23-001 hiPSC thaw\\\" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/\", \"description\": \"Search for LH-EXP-23-001 thaw entry\"}", "outputPreview": "# supermemory semantic search \u2014 10 results for \"LH-EXP-23-001 hiPSC thaw\"\n# searches by meaning across files in this container. usage:\n# grep \"natural language query\" search all files\n# grep \"query\" path/to/dir/ search within directory\n# output: :-: (chunk text is verbatim from the file)\n\n/lab/notebook/20231004_LH-EXP-23-011_Restart-\u2026", "outputChars": 8804 } ] }, { "step": 4, "inputTokens": 37730, "outputTokens": 67, "text": "", "toolCalls": [] }, { "step": 5, "inputTokens": 37730, "outputTokens": 67, "text": "", "toolCalls": [ { "name": "Bash", "input": "{\"command\": \"smfs grep \\\"cell line used differentiation attempt 1\\\" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md\", \"description\": \"Find cell line for LH-EXP-23-003\"}", "outputPreview": "# supermemory semantic search \u2014 10 results for \"cell line used differentiation attempt 1\"\n# searches by meaning across files in this container. usage:\n# grep \"natural language query\" search all files\n# grep \"query\" path/to/dir/ search within directory\n# output: :-: (chunk text is verbatim from the file)\n\n/lab/notebook/20230911_LH-EXP\u2026", "outputChars": 8685 } ] }, { "step": 6, "inputTokens": 42036, "outputTokens": 2, "text": "Found both:\n\n- **LH-EXP-23-003** (first formal differentiation attempt): cell line **hESC-NS-12** (Passage 32), dated **2023-09-11**.\n- **LH-EXP-23-001** (six days earlier, general hiPSC maintenance thaw): cell line **R-H-42b**, dated **2023-09-05**.", "toolCalls": [] } ] } }