× smfs.
Star on GitHub
← Back to runs
Claude Code Claude Code Codex Codex
dp_007 q03 200 files single_hop Claude Code

What is the PubMed ID associated with the Nature Methods paper by Dr. Fatima Al-Sayed that Chloe recommended?

Gold answer

36989870

Filesystem View raw JSON
Input
234k
Output
187
Steps
7
Tools
5
Latency
17.1s
Cost
$3.52
#2 Ran ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 55 chars
Command Bash 
ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/

{
  "description": "List agent_memory directory"
}
Result 5 lines 
communications
coursework_biology
lab
lectures
meetings
#3 Read /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 296 chars
Command Grep 
{
  "pattern": "Al-Sayed",
  "path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/",
  "output_mode": "files_with_matches"
}
Result 6 lines 
Found 5 files
agent_memory/communications/f192_alsayed_paper_followup.md
agent_memory/communications/f172_paper_recommendation_scRNA.md
agent_memory/lectures/BIO-510/20231107_lecture09_notes.md
agent_memory/lectures/BIO-510/final_project.md
agent_memory/lab/meetings/20231031_lab_meeting_notes.md
#4 Read /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 6,884 chars
Command Grep 
{
  "pattern": "Chloe",
  "path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/",
  "output_mode": "files_with_matches"
}
Result 8 lines 
Found 109 files
agent_memory/communications/f173_confusing_results_email.md
agent_memory/communications/f181_lab_lunch_planning.md
agent_memory/communications/f180_bio510_project_submission.md
agent_memory/communications/f188_conference_abstracts_fwd.md
agent_memory/communications/f187_cleaning_duties_reminder.md
agent_memory/communications/f190_coffee_planning.md
agent_memory/communications/f158_…
#5 Edited agent_memory/communications/f172_paper_recommendation_scRNA.md 35,578 chars
Command Read 
{
  "file_path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/communications/f172_paper_recommendation_scRNA.md"
}
Result 10 lines 
1	From: chloe.davis@northwood.edu
2	To: lena.hansen@northwood.edu
3	Date: Thu, 26 Oct 2023 10:15:37 -0400
4	Subject: Paper recommendation - single-cell analysis method
5	
6	Hi Lena,
7	
8	Hope you're having a good week!
9	
10	Following up on our quick chat after the lab meeting yesterday – I remembered a paper that came out a few months ago that I think might be really relevant to some of the ideas…
#6 Edited agent_memory/communications/f192_alsayed_paper_followup.md 30,620 chars
Command Read 
{
  "file_path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/communications/f192_alsayed_paper_followup.md"
}
Result 10 lines 
1	From: lena.hansen@northwood.edu
2	To: chloe.davis@northwood.edu
3	Date: Wed, 8 Nov 2023 10:15:37 -0500
4	Subject: Re: Al-Sayed Paper Recommendation
5	
6	Hi Chloe,
7	
8	Hope you're having a good week!
9	
10	I finally got around to reading the Al-Sayed paper you recommended a couple of weeks ago (the one about the novel computational method for scRNA-seq). Thanks so much for sending it over – it w…
#7 Reasoning 233 chars 
The PubMed ID (PMID) for the Nature Methods paper by Dr. Fatima Al-Sayed that Chloe recommended is **36989870** (mentioned in her email on Oct 26, 2023 at line 111 of `agent_memory/communications/f172_paper_recommendation_scRNA.md`).
Answer
The PubMed ID (PMID) for the Nature Methods paper by Dr. Fatima Al-Sayed that Chloe recommended is **36989870** (mentioned in her email on Oct 26, 2023 at line 111 of `agent_memory/communications/f172_paper_recommendation_scRNA.md`).
Judge: covers all asked facts
SMFS Won View raw JSON
Input
166k
Output
275
Steps
7
Tools
3
Latency
36.8s
Cost
$2.51
#2 Reasoning 52 chars 
Let me search the agent memory for this information.
#3 Ran smfs grep "Fatima Al-Sayed" 2,571 chars
Command Bash 
smfs grep "Fatima Al-Sayed"
Result 7 lines 
# supermemory semantic search — 3 results for "Fatima Al-Sayed"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from the file)

/communications/f172_paper_recommendation_scRNA.md:107-…
#4 Ran smfs grep "Nature Methods PubMed" 3,099 chars
Command Bash 
smfs grep "Nature Methods PubMed"
Result 7 lines 
# supermemory semantic search — 10 results for "Nature Methods PubMed"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from the file)

/lab/notebook/20231018_LH-EXP-23-015_RNA-Harvest…
#5 Ran smfs grep "Chloe recommended" 10,945 chars
Command Bash 
smfs grep "Chloe recommended"
Result 7 lines 
# supermemory semantic search — 10 results for "Chloe recommended"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from the file)

/lab/operations/20231204_lab_lunch_planning.md:104-1…
#7 Reasoning 243 chars 
The PubMed ID is **36989870**. Chloe mentioned it in her email to Lena in the paper recommendation thread (`communications/f172_paper_recommendation_scRNA.md`), alongside the DOI `10.1038/s41592-023-01870-4` for the Nature Methods publication.
Answer
The PubMed ID is **36989870**. Chloe mentioned it in her email to Lena in the paper recommendation thread (`communications/f172_paper_recommendation_scRNA.md`), alongside the DOI `10.1038/s41592-023-01870-4` for the Nature Methods publication.
Judge: covers all asked facts