dp_007 q01 (Codex) | Evaluation Runs

Filesystem View raw JSON

Input

183k

Output

Steps

Tools

Latency

23.5s

Cost

$2.23

Command command_execution

rg -n "Reed Lab|induced pluripotent|iPSC|pluripotent|general maintenance|maintenance" agent_memory

Result 1 lines

agent_memory/meetings/mentor_1on1/20231129_tanaka_notes.md:37:So, the images themselves look pretty good. I managed to get some nice staining for SOX2 (a marker for neural progenitors, which is key for my project) and DAPI (for nuclei, obviously). The hiPSC colonies are generally healthy, though there are a few areas with some minor overgrowth or uneven differentiation, which is normal, I think. K…

Command command_execution

rg -n "protocol_rl_p_002|f141|general maintenance|maintenance of human|human induced pluripotent stem cells|hiPSC Culture" agent_memory

Result 1 lines

agent_memory/meetings/mentor_1on1/20231129_tanaka_notes.md:37:So, the images themselves look pretty good. I managed to get some nice staining for SOX2 (a marker for neural progenitors, which is key for my project) and DAPI (for nuclei, obviously). The hiPSC colonies are generally healthy, though there are a few areas with some minor overgrowth or uneven differentiation, which is normal, I think. K…

Command command_execution

rg --files agent_memory | rg "f141|protocol|SOP|iPSC|hiPSC|stem"

Result 5 lines

agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md
agent_memory/lab/protocols/RL-P-007_hiPSC_neuronal_diff_v3.2.md
agent_memory/lab/protocols/RL-P-011_confocal_microscopy_LSM880.md
agent_memory/coursework_biology/mcb501_lecture10_stem_cells_20231106.md

#1 Ran sed -n '1,220p' agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md 17,987 chars

Command command_execution

sed -n '1,220p' agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md

Result 16 lines

# Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)

**Document ID:** RL-P-002
**Version:** 4.0
**Date Issued:** 2023-09-01
**Author:** Ben Carter (ben.carter@northwood.edu)
**Approved By:** Evelyn Reed, PhD

---

## Table of Contents

1.  [Scope](#scope)
2.  [Definitions](#definitions)
3.  [Safety Precautions](#safety-precautions)
4.  [Mat…

Answer

The lab protocol ID is **RL-P-002**. It appears in `agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md` as the document ID for “General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)” in the Reed Lab.

Judge: covers all asked facts

SMFS Won View raw JSON

Input

85k

Output

Steps

Tools

Latency

20.8s

Cost

$1.06

#1 Ran cat profile.md 158 chars

Command command_execution

cat profile.md

Result 6 lines

# Memory Profile
# This file is auto-generated from your memories.
# It is not editable. To update, modify the source files
# that contain this information.

#1 Ran smfs grep "lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab" /Users/prasanna/Documents/supermemoryai/superm… 8,365 chars

Command command_execution

smfs grep "lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/

Result 5 lines

# supermemory semantic search — 10 results for "lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from…

Answer

The lab protocol ID is `RL-P-002`. It’s listed as **“General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)”** in the Reed Lab SOP, version 4.0.

Judge: covers all asked facts