× smfs.
Star on GitHub
← Back to runs
Claude Code Claude Code Codex Codex
dp_007 q01 200 files single_hop Claude Code

What is the lab protocol ID for general maintenance of human induced pluripotent stem cells in the Reed Lab?

Gold answer

RL-P-002

Filesystem View raw JSON
Input
272k
Output
358
Steps
9
Tools
6
Latency
30.3s
Cost
$4.10
#2 Ran ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 55 chars
Command Bash 
ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/

{
  "description": "List agent_memory directory"
}
Result 5 lines 
communications
coursework_biology
lab
lectures
meetings
#3 Ran ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/ 38 chars
Command Bash 
ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/

{
  "description": "List lab directory"
}
Result 4 lines 
meetings
notebook
operations
protocols
#4 Ran ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/protocols/ 111 chars
Command Bash 
ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/protocols/

{
  "description": "List protocols directory"
}
Result 3 lines 
RL-P-002_general_cell_culture_v4.md
RL-P-007_hiPSC_neuronal_diff_v3.2.md
RL-P-011_confocal_microscopy_LSM880.md
#5 Read agent_memory/lab/protocols/ 206 chars
Command Grep 
{
  "pattern": "induced pluripotent|hiPSC|iPSC|maintenance",
  "path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/protocols/",
  "output_mode": "files_with_matches"
}
Result 4 lines 
Found 3 files
agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md
agent_memory/lab/protocols/RL-P-007_hiPSC_neuronal_diff_v3.2.md
agent_memory/lab/protocols/RL-P-011_confocal_microscopy_LSM880.md
#6 Read /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 9,689 chars
Command Grep 
{
  "pattern": "maintenance|hiPSC",
  "path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/",
  "output_mode": "content",
  "-n": true,
  "head_limit": 40
}
Result 2 lines 
agent_memory/communications/f171_query_re_Gruber_2018.md:339:Regarding your current challenge with definitive endoderm induction variability, this is a common hurdle in directed differentiation protocols. While our 2018 paper focused primarily on pluripotency maintenance and initial differentiation cues, the downstream steps towards definitive endoderm often require careful optimization.
agent_mem…
#8 Read agent_memory/lab/ 7,175 chars
Command Grep 
{
  "pattern": "hiPSC|induced pluripotent|maintenance",
  "path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/",
  "output_mode": "content",
  "-n": true,
  "head_limit": 30
}
Result 3 lines 
agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md:1:# Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)
agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md:30:    4.  [hiPSC Passaging (Manual Dissociation)](#hipsc-passaging-manual-dissociation)
agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md:50:[Omitte…
#9 Reasoning 220 chars 
Found it. The protocol is `RL-P-002`, titled "General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)" (file: `agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md`).

**Lab protocol ID: RL-P-002**
Answer
Found it. The protocol is `RL-P-002`, titled "General Maintenance of Human Induced Pluripotent Stem Cells (hiPSCs)" (file: `agent_memory/lab/protocols/RL-P-002_general_cell_culture_v4.md`). **Lab protocol ID: RL-P-002**
Judge: covers all asked facts
SMFS Won View raw JSON
Input
94k
Output
1
Steps
3
Tools
1
Latency
8.6s
Cost
$1.40
#2 Ran smfs grep "lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab" /Users/prasanna/Documents/supermemoryai/superm… 8,364 chars
Command Bash 
smfs grep "lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/

{
  "description": "Semantic search for Reed Lab iPSC maintenance protocol"
}
Result 5 lines 
# supermemory semantic search — 10 results for "lab protocol ID general maintenance human induced pluripotent stem cells Reed Lab"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from…
#3 Reasoning 169 chars 
The lab protocol ID is **RL-P-002** (Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells, version 4.0, issued 2023-09-01).
Answer
The lab protocol ID is **RL-P-002** (Reed Lab Standard Operating Procedure: General Maintenance of Human Induced Pluripotent Stem Cells, version 4.0, issued 2023-09-01).
Judge: covers all asked facts