dp_007 q04 (Claude Code) | Evaluation Runs

Claude Code

dp_007 q04 200 files multi_hop Claude Code

What is the cell line Lena used for her first formal differentiation attempt (per lab notebook LH-EXP-23-003), and what was the date of that attempt? For context, name also the different cell line she had thawed for general hiPSC maintenance six days earlier (per LH-EXP-23-001).

Gold answer

First differentiation attempt: cell line hESC-NS-12 on 2023-09-11 (lab notebook LH-EXP-23-003). The earlier general-maintenance thaw on 2023-09-05 (LH-EXP-23-001) used a different line, R-H-42b.

Filesystem View raw JSON

Input

266k

Output

301

Steps

Tools

Latency

23.2s

Cost

$4.02

#2 Ran ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 55 chars

Command Bash

ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/

{
  "description": "List agent_memory contents"
}

Result 5 lines

communications
coursework_biology
lab
lectures
meetings

#3 Ran ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/ 38 chars

Command Bash

ls /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/

{
  "description": "List lab folder contents"
}

Result 4 lines

meetings
notebook
operations
protocols

#4 Read /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/ 153 chars

Command Grep

{
  "pattern": "LH-EXP-23-00[13]",
  "path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/",
  "output_mode": "files_with_matches"
}

Result 3 lines

Found 2 files
agent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md
agent_memory/lab/notebook/20230905_LH-EXP-23-001_First-Thaw.md

#5 Edited agent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md 24,278 chars

Command Read

{
  "file_path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md"
}

Result 10 lines

1	# Lab Notebook: LH-EXP-23-003 - Neuronal Differentiation - Attempt 1
2	
3	**Date:** 2023-09-11
4	**Author:** Lena Hansen
5	**Project:** Core Project - hiPSC Neuronal Differentiation
6	**Experiment Series:** experiment_series_lh_23
7	
8	## Overview
9	
10	This marks the beginning of the first formal attempt at inducing neuronal differentiation from the established human induced pluripotent stem ce…

#6 Edited agent_memory/lab/notebook/20230905_LH-EXP-23-001_First-Thaw.md 4,526 chars

Command Read

{
  "file_path": "/Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/fs/dp_007/agent_memory/lab/notebook/20230905_LH-EXP-23-001_First-Thaw.md",
  "limit": 50
}

Result 10 lines

1	# Lab Notebook Entry: LH-EXP-23-001 - First Thaw
2	
3	**Date:** 2023-09-05
4	**Author:** Lena Hansen
5	**Project:** Rotation Project - hiPSC Maintenance and Differentiation
6	**Location:** Maple Creek Lab, Cell Culture Suite 2B
7	
8	## Objective
9	
10	This entry details the first successful thaw and plating of human induced pluripotent stem cells (hiPSCs), specifically line R-H-42b. The primary …

#8 Reasoning 311 chars

Per the lab notebooks in `agent_memory/lab/notebook/`:

- **First formal differentiation attempt (LH-EXP-23-003):** cell line **hESC-NS-12** (Passage 32), on **2023-09-11**.
- **Six days earlier (LH-EXP-23-001):** the line thawed for general hiPSC maintenance was **R-H-42b** (Lot # 789-GHI), on **2023-09-05**.

Answer

Per the lab notebooks in `agent_memory/lab/notebook/`: - **First formal differentiation attempt (LH-EXP-23-003):** cell line **hESC-NS-12** (Passage 32), on **2023-09-11**. - **Six days earlier (LH-EXP-23-001):** the line thawed for general hiPSC maintenance was **R-H-42b** (Lot # 789-GHI), on **2023-09-05**.

Judge: covers all asked facts

SMFS Won View raw JSON

Input

210k

Output

160

Steps

Tools

Latency

16.1s

Cost

$3.16

#2 Ran smfs grep "LH-EXP-23-003 differentiation cell line" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/… 7,638 chars

Command Bash

smfs grep "LH-EXP-23-003 differentiation cell line" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/

{
  "description": "Search for LH-EXP-23-003 differentiation entry"
}

Result 7 lines

# supermemory semantic search — 10 results for "LH-EXP-23-003 differentiation cell line"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from the file)

/lab/notebook/20231106_LH-EXP-…

#3 Ran smfs grep "LH-EXP-23-001 hiPSC thaw" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_me… 8,804 chars

Command Bash

smfs grep "LH-EXP-23-001 hiPSC thaw" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/

{
  "description": "Search for LH-EXP-23-001 thaw entry"
}

Result 7 lines

# supermemory semantic search — 10 results for "LH-EXP-23-001 hiPSC thaw"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from the file)

/lab/notebook/20231004_LH-EXP-23-011_Restart-…

#5 Ran smfs grep "cell line used differentiation attempt 1" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs… 8,685 chars

Command Bash

smfs grep "cell line used differentiation attempt 1" /Users/prasanna/Documents/supermemoryai/supermemoryfs/.scratch/eval/eval/workspace/smfs/dp_007/agent_memory/lab/notebook/20230911_LH-EXP-23-003_Differentiation-Attempt1.md

{
  "description": "Find cell line for LH-EXP-23-003"
}

Result 7 lines

# supermemory semantic search — 10 results for "cell line used differentiation attempt 1"
# searches by meaning across files in this container. usage:
#   grep "natural language query"          search all files
#   grep "query" path/to/dir/              search within directory
# output: <filepath>:<line_start>-<line_end>:<chunk> (chunk text is verbatim from the file)

/lab/notebook/20230911_LH-EXP…

#6 Reasoning 250 chars

Found both:

- **LH-EXP-23-003** (first formal differentiation attempt): cell line **hESC-NS-12** (Passage 32), dated **2023-09-11**.
- **LH-EXP-23-001** (six days earlier, general hiPSC maintenance thaw): cell line **R-H-42b**, dated **2023-09-05**.

Answer

Found both: - **LH-EXP-23-003** (first formal differentiation attempt): cell line **hESC-NS-12** (Passage 32), dated **2023-09-11**. - **LH-EXP-23-001** (six days earlier, general hiPSC maintenance thaw): cell line **R-H-42b**, dated **2023-09-05**.

Judge: covers all asked facts